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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816090.1_cds_XP_016498617.1_12626
CDS Infomation

[gene=LOC107817329] [db_xref=GeneID:107817329] [protein=probable sphingolipid transporter spinster homolog 2] [protein_id=XP_016498617.1] [location=join(34852..35000,35627..35758,36121..36222,42646..42750,42876..42951,44478..44552,44649..44751,44818..44880,46161..46215,46353..46450,46637..46713,46992..47105,50591..50710,51346..51474,52295..52373,52500..52627)] [gbkey=CDS]
Sequence

ATGAGAGAGACAGAGCCAAATCTAAAGTCTTTGGATGATTCAATGCCTAAAAGCCCGTCA
TCAGTGGCTGCGCCTGCAAAATCAGACATGGCCAAAGCTTCAATTTCATCAGCATTAGCT
CTTCAACCTTCTTGGTTCACTGCCAAAAGGTTACTAGCCATATTCTGTGTGATCAACTTG
TTAAATTATGTGGATCGTGGAGCTATTGCAAGCAATGGTGTTAATGGGAAACGTAGTGAG
TGTACTAAGAGCGGTACATGCTCTTCTGGCAGTGGAATCCAGGGTGATTTTAACTTGAAC
AATTTTCAGGATGGTGTTATATCATCTGCTTTCATGGTTGGGCTTCTCGTGGCATCTCCA
ATATTTGCCTCCTTAGCCAAGAGTGTTAATCCATTTAGACTTATTGGAGTTGGACTGACA
GTCTGGACCTTTGCTACTGCTGGTTGTGGCCTGTCAATTGATTTCTGGTCCATTACCATA
TGCAGAATGCTGGTCGGTGTTGGTGAGGCATCTTTCATAAGCCTTGCTGCTCCATTCATT
GATGACAATGCCCCAGTTGATCAGAAAACAGCATGGCTGGGAATATTTTACATGTGCATC
CCAACTGGGATTGCTGTTGGCTATGTATATGGCGGATTGGTTGGAAGCCATCTTGATTGG
CGTTGGGCATTCTGGATAGAGGCATTGCTGATGCTTCCTTTTGCAATTTTAGGTTTTGTG
ATGAAACCGTTGCAATTGAAAGGTTTCTCGCACACGGGATCACAAAAACCAGTGACTTCT
GCGCAGACTTCTTGCCCAGAAGCAGTTGCTTCTACTAGTATAGATGGTTCATACCCAACA
AGAAATGATTCCAAGGATGATTCAAAAAGTGCACCCAGAATTTTGAATCAGTTGACAAGA
TTTTGGAAGGATATGAAGGTGCTTTTGCTTGAAAAGGTCTACATTGTGAATGTCCTAGGA
TACATAGCATATAATTTTGTAATAGGTGCTTATTCATACTGGGGACCAAAGGCTGGCTAT
TACATATACCATATGAACAATGCAGATCTGATGTTTGGAGGTATTACTATCGTATGTGGA
ATATTTGGAACCTTAGCAGGAGGCTTTGTTCTGGATCGAATGACTTCCACAATATCCAAT
GCCTTTAAGCTTCTTTCAGTGGCAACATTTTTTGGAGCGATATTTTGCTTTGCTGCCTTT
TGTTTTAAGAGCTTGTATGCCTTCATTGCTCTTTTTGCAATTGGAGAACTGCTTGTATTT
GCGACGCAGGGCCCTGTAAATTATGTCTGTTTGCATTGCGTCAAACCAAGTTTGAGACCA
TTGTCTATGGCTATGTCCACTGTTTCGATTCACATATTTGGTGATGTGCCTTCCTCTCCT
CTGGTGGGCGTTCTCCAGGATCACATTAACAATTGGAGGGCTACTGCTCTAATCCTGACA
TCAGTACTGTTTCTAGCCTCTGGAATATGGTTTATAGGTATCTTTCTTCATAGTGTTGAT
AGATATAATGAAGAAAATGAGCATCAAGTTAGTATTGCTGATAGATCAAACACAATTCCA
CTTCTTGAGGAGAAATCTGCTGAAACAAGTCCAAGTCTCTGCTGA

Peptide Sequence

PEP ID

XP_016498617.1
PEP Infomation

PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana tabacum]
Sequence

MRETEPNLKSLDDSMPKSPSSVAAPAKSDMAKASISSALALQPSWFTAKRLLAIFCVINL
LNYVDRGAIASNGVNGKRSECTKSGTCSSGSGIQGDFNLNNFQDGVISSAFMVGLLVASP
IFASLAKSVNPFRLIGVGLTVWTFATAGCGLSIDFWSITICRMLVGVGEASFISLAAPFI
DDNAPVDQKTAWLGIFYMCIPTGIAVGYVYGGLVGSHLDWRWAFWIEALLMLPFAILGFV
MKPLQLKGFSHTGSQKPVTSAQTSCPEAVASTSIDGSYPTRNDSKDDSKSAPRILNQLTR
FWKDMKVLLLEKVYIVNVLGYIAYNFVIGAYSYWGPKAGYYIYHMNNADLMFGGITIVCG
IFGTLAGGFVLDRMTSTISNAFKLLSVATFFGAIFCFAAFCFKSLYAFIALFAIGELLVF
ATQGPVNYVCLHCVKPSLRPLSMAMSTVSIHIFGDVPSSPLVGVLQDHINNWRATALILT
SVLFLASGIWFIGIFLHSVDRYNEENEHQVSIADRSNTIPLLEEKSAETSPSLC

Transcript Sequence

Gene sequence data has not been registered.